PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01628_BGI-A2_v1.0
Common NameF383_05716
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 546aa    MW: 56440.4 Da    PI: 8.6944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01628_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056082123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C+k F r  nL+ H r H
  Cotton_A_01628_BGI-A2_v1.0 60 FVCEICNKGFQRDQNLQLHRRGH 82
                                89*******************88 PP

2zf-C2H211.10.0013136158123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC +C+k +  +s+ k H + +
  Cotton_A_01628_BGI-A2_v1.0 136 WKCDKCSKKYAVQSDWKAHSKIC 158
                                 58*****************9876 PP

3zf-C2H211.50.00096166184523
                                 TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                 dCg++Fsr++++ +H   +
  Cotton_A_01628_BGI-A2_v1.0 166 DCGTVFSRRDSFITHRAFC 184
                                 9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-75982No hitNo description
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MPVDDNSSTV SGDASVSSTG NQNLPLKSTV KKKRNLPGMP DPDAEVIALS PTTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVKKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH  180
RAFCDALAVE SAKTQTNPSS ESDPKVQAAD SSPRRSPPAA SPPVSAPSAI TSSDIRIQSS  240
VLAEDPSTVV EEAPAPAPAP SAPPAGLNGS SSSSVSLVSS GCNSSSSSVF SNLFTSTTVS  300
TSIHPPQPLA PALPLVGLNG SCSGSVSLVS SGASSSSSSG VFASLFASST VSASIQPPQT  360
PALTNLIRAD LAPSTSIEPI SLCLSTSHGS SIFGTTGQER RQHAPPLQPA MSATALLQKA  420
AQMGAAASNA SLLRGLGVVS SSAPQENLQW GQAQVDPDNA SIAAGLGLGL PCDGSSGLKE  480
LMMGTPVFGP KQTTLDFLGL GVAAGGNPNA SLSALITSIG SGFDATTAAA SVRGGDYTSK  540
DIGRSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469451.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B0PEB20.0A0A0B0PEB2_G
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-108C2H2-like zinc finger protein